Friday, December 4, 2015

The Neural Patterns Birds Use to Learn Songs

Singing in the Brain: Uncovering the Neural Patterns Birds Use to Learn Songs

Male zebra finches, small songbirds native to central Australia, learn their songs by copying what they hear from their fathers. These songs, often used as mating calls, develop early in life as juvenile birds experiment with mimicking the sounds they hear.
MIT neuroscientists have now uncovered the brain activity that supports this learning process. Sequences of neural activity that encode the birds’ first song syllable are duplicated and altered slightly, allowing the birds to produce several variations on the original syllable.
Eventually these syllables are strung together into the bird’s signature song, which remains constant for life.
“The advantage here is that in order to learn new syllables, you don’t have to learn them from scratch. You can reuse what you’ve learned and modify it slightly. We think it’s an efficient way to learn various types of syllables,” says Tatsuo Okubo, a former MIT graduate student and lead author of the study, which appears in the Nov. 30 online edition of Nature.
Okubo and his colleagues believe that this type of neural sequence duplication may also underlie other types of motor learning. For example, the sequence used to swing a tennis racket might be repurposed for a similar motion such as playing Ping-Pong. “This seems like a way that sequences might be learned and reused for anything that involves timing,” says Emily Mackevicius, an MIT graduate student who is also an author of the paper.
The paper’s senior author is Michale Fee, a professor of brain and cognitive sciences at MIT and a member of the McGovern Institute for Brain Research.
Bursting into song
Previous studies from Fee’s lab have found that a part of the brain’s cortex known as the HVC is critical for song production.
Typically, each song lasts for about one second and consists of multiple syllables. Fee’s lab has found that in adult birds, individual HVC neurons show a very brief burst of activity — about 10 milliseconds or less — at one moment during the song. Different sets of neurons are active at different times, and collectively the song is represented by this sequence of bursts.
In the new Nature study, the researchers wanted to figure out how those neural patterns develop in newly hatched zebra finches. To do that, they recorded electrical activity in HVC neurons for up to three months after the birds hatched.
When zebra finches begin to sing, about 30 days after hatching, they produce only nonsense syllables known as subsong, similar to the babble of human babies. At first, the duration of these syllables is highly variable, but after a week or so they turn into more consistent sounds called protosyllables, which last about 100 milliseconds. Each bird learns one protosyllable that forms a scaffold for subsequent syllables.
The researchers found that within the HVC, neurons fire in a sequence of short bursts corresponding to the first protosyllable that each bird learns. Most of the neurons in the HVC participate in this original sequence, but as time goes by, some of these neurons are extracted from the original sequence and produce a new, very similar sequence. This chain of neural sequences can be repurposed to produce different syllables.
“From that short sequence it splits into new sequences for the next new syllables,” Mackevicius says. “It starts with that short chain that has a lot of redundancy in it, and splits off some neurons for syllable A and some neurons for syllable B.”

Image of a zebra finch and musical notes.
When zebra finches first begin to sing, they produce only nonsense syllables similar to the babble of human babies. Now researchers at MIT have uncovered the brain activity that supports the birds’ song-learning process. Credit: MIT News.

This splitting of neural sequences happens repeatedly until the birds can produce between three and seven different syllables, the researchers found. This entire process takes about two months, at which point each bird has settled on its final song.
“This is a very natural way for motor patterns to evolve, by repeating something and then molding it, but until now nobody had any good data to understand how the brain actually does that,” says Ofer Tchernichovski, a professor of psychology at Hunter College who was not involved in the research. “What’s cool about this paper is they managed to follow how brain centers govern these transitions from simple repetitive patterns to more complex patterns.”
Evolution by duplication
The researchers note that this process is similar to what is believed to drive the production of new genes and traits during evolution.
“If you duplicate a gene, then you could have separate mutations in both copies of the gene and they could eventually do different functions,” Okubo says. “It’s similar with motor programs. You can duplicate the sequence and then independently modify the two daughter motor programs so that they can now each do slightly different things.”
Mackevicius is now studying how input from sound-processing parts of the brain to the HVC contributes to the formation of these neural sequences.
About this neuroscience research
Source: Anne Trafton – MIT
Image Source: The image is credited to MIT News
Original Research: Abstract for “Growth and splitting of neural sequences in songbird vocal development” by Tatsuo S. Okubo, Emily L. Mackevicius, Hannah L. Payne, Galen F. Lynch and Michale S. Fee in Nature. Published online November 30 2015 doi:10.1038/nature15741

Abstract
Growth and splitting of neural sequences in songbird vocal development
Neural sequences are a fundamental feature of brain dynamics underlying diverse behaviours, but the mechanisms by which they develop during learning remain unknown. Songbirds learn vocalizations composed of syllables; in adult birds, each syllable is produced by a different sequence of action potential bursts in the premotor cortical area HVC. Here we carried out recordings of large populations of HVC neurons in singing juvenile birds throughout learning to examine the emergence of neural sequences. Early in vocal development, HVC neurons begin producing rhythmic bursts, temporally locked to a ‘prototype’ syllable. Different neurons are active at different latencies relative to syllable onset to form a continuous sequence. Through development, as new syllables emerge from the prototype syllable, initially highly overlapping burst sequences become increasingly distinct. We propose a mechanistic model in which multiple neural sequences can emerge from the growth and splitting of a common precursor sequence.
“Growth and splitting of neural sequences in songbird vocal development” by Tatsuo S. Okubo, Emily L. Mackevicius, Hannah L. Payne, Galen F. Lynch and Michale S. Fee in Nature. Published online November 30 2015 doi:10.1038/nature15741







Link:  http://neurosciencenews.com/nvc-neurons-learning-song-birds-3183/



Tuesday, September 29, 2015

FreePort [No 007]: Céleste Boursier-Mougenot

Published on Feb 7, 2014
In this interview, artist Céleste Boursier-Mougenot talks about "from here to ear," an immersive sonic installation at PEM that pairs 70 live zebra finches with amplified guitars in a gallery-turned-aviary. He also discusses his background and influences.




Want to know more about the influential composition "In C" and Terry Riley? Check out this great RadioLab podcast http://www.radiolab.org/story/91934-i...

FreePort [No. 007] runs through April 13, 2014. For more information about tickets, visit this sitehttp://pem.org/exhibitions/164-freepo...

Video created by Chip Van Dyke, Media Production Manager at the Peabody Essex Museum.
  • Category

  • License

    • Standard YouTube License



Zebra Finches on guitar strings

A Glimpse of FreePort [No. 007]: Céleste Boursier-Mougenot

Published on Jan 15, 2014
What is the sound of 70 zebra finches living in a gallery full of amplified guitars?

Artist Céleste Boursier-Mougenot prepares PEM's Barton Gallery for his transportive sound installation titled "from here to ear." This installation will be at the Peabody Essex Museum from January 18 to April 14, 2014. Don't miss this unique experience!

Generous support provided by FreePort funders Jeffrey P. Beale and Fay Chandler. Presented with the support of the Institut Français and the Cultural Services of the French Embassy in the United States. Additional support provided by the East India Marine Associates of the Peabody Essex Museum.

Media Partner: 92.5 The River

Video created by Chip Van Dyke, Media Production Manager at the Peabody Essex Museum.
  • Category

  • License

    • Standard YouTube License



Sunday, August 16, 2015

Peregrine falcon nest in Chicago


Diary of an urban peregrine falcon nest in Chicago – in pictures 
| Environment | The Guardian:



13/05/2015 Chicago is situated on major migrant flyway, so a steady stream of prey is present for the peregrines.

Wild peregrines’ nests are usually inaccessible or the birds not human tolerant. These rare images show the nesting cycle of wild peregrine falcons, with the Chicago skyline as a stunning backdrop
Photograph: Luke Massey/www.lmasseyimages.com


Wild peregrines’ nests are usually inaccessible or the birds not human tolerant. These images are the first of their kind to show the nesting cycle of wild peregrine falcons, with the Chicago skyline as a stunning backdrop


13/05/2015: Peregrines are adapting to breeding in cities around the world. The tall office blocks and apartments are seen by them as pseudo cliffs



20/05/2015: Peregrines are the fastest birds on Earth, and have been recorded diving at speeds of over 200mph. They prey upon birds, from small ducks and pigeons to blackbirds and swifts
Photograph: Luke Massey/www.lmasseyimages.com




11/06/2015 A peregrine falcon nest diary in Chicago: from brooding to hatching and now fledging.
11/06/2015 A peregrine falcon nest diary in Chicago: from brooding to hatching and now fledging.


14/06/2015 A peregrine falcon nest diary in Chicago: from brooding to hatching and now fledging.
14/06/2015: This chick has been banded, so that volunteers and scientists can monitor population recovery and location


09/06/2015 They hatched in the flower pot but eventually had to jump out on to the balcony as they were too large.
11/06/2015: The Chicago peregrine programme began in 1985 as a cooperative effort to help re-establish peregrines in the Midwest. An estimated 400-500 pairs of peregrines once nested in the Midwest and eastern United States, but by the 1960s, the species had been wiped out regionally
Photograph: Luke Massey/www.lmasseyimages.com



08/06/2015 The Chicago peregrine project monitors the cities 20 breeding pairs of peregrine. They liase with building management and ring the chicks so they can be identified and tracked after leaving the nest.
08/06/2015: The Chicago peregrine programme monitors the city’s 20 breeding pairs of peregrine. They liase with building management and ring the chicks so they can be identified and tracked after leaving the nest
Photograph: Luke Massey/www.lmasseyimages.com



10/06/2015 They hatched in the flower pot but eventually had to jump out on to the balcony as they were too large.

09/06/2015: One chick (from another nest) was once recovered in Ecuador after fledging in Chicago!
Photograph: Luke Massey/www.lmasseyimages.com






See More:
http://www.theguardian.com/environment/gallery/2015/aug/10/diary-of-urban-peregrine-falcon-nest-chicago-in-pictures

Diary of an urban peregrine falcon nest in Chicago – in pictures | Environment | The Guardian:
Source:
http://www.theguardian.com/environment/gallery/2015/aug/10/diary-of-urban-peregrine-falcon-nest-chicago-in-pictures

'via Blog this'



Sparrowhawks



BBC Blogs - Springwatch



Sparrowhawks: Friend or foe?







Sparrowhawks are one of our native species of birds celebrated for their majesty, speed and agility. They’re nature’s Top Gun, with awe-inspiring skills and, maybe, an avian predator that we don’t need to vilify for taking our garden birds.

Sparrowhawks can be identified by their short wings and long, blunt tail.


Sparrowhawks have made a dramatic comeback over the past 30 years.


Studies have shown that sparrowhawk presence has no impact on blue tit populations








This research is from the UK but we have a version of this bird in B.C. A woman described to me how she has one that takes a single sparrow daily from her bird feeder.  She uses it to teach her grandchildren about wildlife survival.  She feels guilty about putting out food for the birds because it sets the ambush BUT that's life...

Denial of Death by Ernst Becker says, 


The American kestrel (Falco sparverius), sometimes colloquially known as the sparrow hawk, is a small falcon, and the only kestrelfound in the Americas. It is the most common falcon in North America, and is found in a wide variety of habitats. At 19–21 cm (7–8 in) long, it is also the smallest falcon in North America. It exhibits sexual dimorphism in size and plumage, although both sexes have a rufous back with noticeable barring. Juveniles are similar in plumage to adults.
The American kestrel hunts by hovering in the air with rapid wing beats or perching and scanning the ground for prey. Its diet typically consists of grasshopperslizards, mice, and small birds (e.g. sparrows). It nests in cavities in trees, cliffs, buildings, and other structures. The female lays three to seven eggs, which both sexes help to incubate. It is a common bird to be used in falconry, especially by beginners. Though not as aggressive a hunter as many other larger falcons, proper training and weight control by the falconer allows many kestrels to become effective hunters of birds in the size range of sparrows and starlings, with occasional success against birds up to approximately twice their own weight.[2]
Its breeding range extends from central and western Alaska across northern Canada to Nova Scotia, and south throughout North America, into central Mexico and the Caribbean. It is a local breeder in Central America and is widely distributed throughout South America. Most birds breeding in Canada and the northern United States migrate south in the winter. It is an occasional vagrant to western Europe.
Source: https://en.wikipedia.org/wiki/American_kestrel







Link: http://www.theguardian.com/environment/gallery/2015/aug/10/diary-of-urban-peregrine-falcon-nest-chicago-in-pictures









BBC Blogs - Springwatch - Sparrowhawks: Friend or foe?:



Source: http://www.bbc.co.uk/blogs/natureuk/entries/43860fa9-d866-4e51-9795-74370a03e169?utm_content=buffer1e633&utm_medium=social&utm_source=twitter.com&utm_campaign=buffer



'via Blog this'






Saturday, July 11, 2015

A Bird Sanctuary Called Pandemonium


Lady Gouldian finches, like these at the Pandemonium Aviaries in California, can show a great deal of intelligence and desire to communicate.
PHOTOGRAPH BY MICHAEL D. KERN


A Bird Sanctuary Called Pandemonium

Life Among the Exotic and the Endangered

Raffin, Michele Book - 2014


In 1996, Michele Raffin, author of The Birds of Pandemonium: Life Among the Exotic and the Endangered, opened a bird rescue center. Today, Pandemonium is one of the largest non-companion bird sanctuaries in the United States, providing lifelong care for more than 350 birds, representing 34 species, some of them critically endangered.

PHOTOGRAPH COURTESY OF ALGONQUIN BOOKS 

Talking from her bird-filled office in Los Altos, California, she introduces us to a two-inch-tall avian architect named Oscar and explains why birds prefer listening to Jingle Bellsover Leonard Cohen, how you can break a parrot's heart, and why birds have made her a better person.

Why the name, Pandemonium?

There's the real reason, and then there's the official reason. The official reason is that pandemonium is the flock name for parrots: a pandemonium of parrots.

But the real reason is that it's really reflective of what life is like here. When you run an organization that has hundreds of birds in a suburban neighborhood, there's always a lot going on. It's raucous, and it's a lot of life. So any of the more idyllic, sweet-sounding names that we considered, and that I'd have preferred, didn't fit who we are.

So many of the birds you write about touch our hearts. I'm torn to have to ask you to tell us just one or two stories—but you must start off with Oscar.

Absolutely. Oscar was a gorgeous Lady Gouldian Finch, but he couldn't fly. He could get off the ground for about an inch or two, but no matter how hard he tried, he really wasn't able to fly like the other finches in his aviary.

I wasn't really aware of what a problem that was for him until nighttime. He wanted to fly up to the roost with the other birds but wasn't able to. So I decided I'd improvise a small perch for him, so he wouldn't be on the ground at night.

Birds are very observant. In fact I think there are more birds watching people than there are people watching birds. So Oscar watched what I was doing—and then he had a better idea. I was using bamboo stakes, and he would hop up on the stake and then focus his eyes to where he wanted the next stake. He actually showed me how to build him a ladder up to the other finches. I was the carpenter, and he was the architect.

It was a very powerful lesson from a very small creature who seemed to have a great deal of intelligence and desire to communicate. That was my first really powerful experience of having a relationship with a bird that was based on a two-way communication. And if there's one thing I would want to communicate to everyone, Simon, it's that cross-species communication is not only possible but desirable from the birds' point of view. I don't think a world in which species are separate is really the natural order.


Pandemonium Aviaries (one of its birdhouses, above) is a bird-centric environment for abandoned and unadoptable birds.
PHOTOGRAPH BY MICHAEL D. KERN

Explain to us why every day is Christmas at Pandemonium. Have you tried playing the birds Leonard Cohen songs?

Leonard Cohen just wouldn't cut it. The parrots are really into beat, and they communicate their preferences very loudly. If they don't like music, they'll just sit there and look at you without moving. And as soon as you put something on that has a good beat, they start dancing or singing. I mean, theyreally dance with the rhythm. Some species seem to have more rhythm than others. Cockatoos are amazing. My African greys are hysterical. They bop around. But it's not species-dependent. Shana, a yellow-headed Amazon parrot, can't keep a beat. She can sing, but she can't dance.

The other day, Tico, a blue-and-gold macaw, was in my office, and we were listening to music. He really likes Disney songs. The Princess collection is his favorite. I've tried to expand his repertoire of show tunes, but Christmas music for some reason is something they all respond to.

Tape loops of Jingle Bells?

It seems like it's endless. The good news is I've learned how to use my iPhone so we have portable music when they're outside in the aviary. It's a common denominator for birds. When I first started in rescue, I'd pick up a very frightened bird and sing to it. I have a terrible voice. I really do! So I don't know if they figured anybody who sang as poorly as I did was no threat—or whether there's something universal about music among creatures that make their own music. Music forms a bridge.

What's a typical day in your life at Pandemonium, if there is such a thing as a typical day?

A typical day is controlled chaos. In this line of work you have to be prepared to do what it takes. We have several guiding principles, and one of them is that we're bird-centric. What the birds need, the birds get. If there's a bird emergency, whatever else is scheduled gets canceled. That's just the way it is. One has to be prepared to be flexible.

There's a lot of coordination. We get a lot of donated food. Our birds get an amazing diet of fresh fruits and vegetables every day. We feed live insects, nectars, pollen, grains, pellets. It's a huge task. When there are babies, we want the parents to raise them. But sometimes the eggs are abandoned, or the babies are abandoned, so we have to raise them by hand. That means feeding every two hours, day and night. It's pretty grueling, but we have to pretend to be bird parents. We go "peep peep peep" with some of them, and pull their hair like their parents would, or make them eat something they don't want to.

Nobody takes a salary in my office. I don't take a salary. So we constantly have to fund-raise. It's a labor of love. But it's also joyful. It's full of, oh my God, so many just sparkling moments! Yesterday, two blue-combed pigeons were feeding their baby, and I just watched and watched. It was such a joy to see the parents feeding the baby in a way that's natural for both of them. It is so beautiful. We've got lovely gardens, and all kinds of wild birds and butterflies. We're about life. About giving life, protecting life—and ensuring that it goes on.

Author Michele Raffin says her time with birds has been "transformative."
PHOTOGRAPH BY MICHAEL D. KERN

Pandemonium is not just a bird rescue. You're involved in the conservation and the saving of species threatened with extinction, aren't you?

Absolutely. We shut down the rescue element in 2009, because a rescue has animals coming in and going out when they find a home. We were a sanctuary for unadoptable birds that had no other place to go for a variety of reasons: They needed big aviaries, or they were handicapped, or they were no longer wanted. There were a finite number of birds that we could save, though—a few hundred.

As conservation breeders and educators we can save many more birds. We can hopefully even save species. Our focus is on six specific species, such as the crowned pigeons of New Guinea, which are our modern-day dodos—like the dodo they could become extinct if we don't do something to conserve the species. We don't know how many are left in the wild. There have been no surveys recently. But our intention is to one day return this species to their original home, the wilds of New Guinea. It's not going to happen overnight, but that's our goal.


It's not a responsibility to be taken lightly. They're wonderful, amazing birds that make incredibly exotic pets. But it's much more important to protect and honor the wild in them and to one day repopulate forests that also need to be protected from deforestation caused by the palm oil industry.

Tico, a blue-and-gold macaw who lives at the sanctuary, is very emotional and loves Disney tunes.
PHOTOGRAPH BY MICHAEL D. KERN

New research shows that animals and birds are capable of complex emotion previously believed to be the preserve of us bipeds. Has that been your experience?

Absolutely. In so many different ways. I say somewhere in the book that birds mourn, they love, they court, they have emotional memory, they make decisions about who they like and who they don't like. They're complex.

Tico, my macaw, is very emotional. He gets really furious with me at times, and I just sort of act silly and joke with him. Sometimes that works, and he forgets he's angry at me. But other times I just have to say, I'm really sorry, Tico. I fetch treats, I court him.

There's no question in my mind after living with birds for so many years that they do have feelings and that in some cases their feelings are very strong for their mates and their children. And they really suffer when something happens to someone else in their family.

You quote Antoine de Saint-Exupéry, "you remain responsible forever for what you have tamed." Talk about the emotional turmoil rescue animals face after being dumped by their human being.

You have to understand that parrots, in particular, have been tested to have the intelligence of a two- to four-year-old human child. They're very smart and have emotional intelligence. If you were to take a three-year-old human child and suddenly without warning or explanation, put that child in a new family, or environment, with new rules, new food … how would that child react? How would that child feel?

The average number of homes a companion bird has in one lifetime is about seven. That's tough on them. It takes time for them to come to terms with the change and with their new environment. They grieve the loss of their family—their flock.


The strategy I chose when I was doing rescue was to meet the birds on their own terms. I didn't try to rush them. I let them know over and over again that I was going to be kind to them, that I was trustworthy.


Shana, one of our parrots, took a very long time to recover. I almost gave up, but when she came around, she came around big time. She has such gusto and joie de vivre. She just loves life and is this positive diva, the funniest bird in the center. But it took time for her to recover from the rejection of being given up by her original family.

You write that the human understanding of the emotions of birds is inadequate at best and that the term "bird-brained" is a misnomer. Unpack that idea for us.

"Bird brain" is actually quite a compliment, because if you look at the size of their brain in relationship to their body, you see how incredibly intelligent they are. I just read some research on fairy wrens a couple days ago. Did you know that when the babies are still inside the eggs, they learn a password from their parents that's useful when they hatch? This is because there are parasitic birds that lay eggs in fairy wren nests, and those babies tend to hatch earlier and are bigger. So the wrens have a way to distinguish their true offspring before they hatch.

We thought humans were the only ones who knew embryos can hear. But it's probably true of many different species. We understand so little of the world around us.

I think of birds and other creatures as fellow travelers on this Earth, not here to serve us, but … how do I put this? They're fellow nations, to be respected, admired, cared for—and definitely to be preserved.

You're clearly very deeply involved with your birds. How do you combine this with your non-avian relationships?

Birds have taught me to be a better person. They require great authenticity and quiet. Before my relationship with birds I probably talked without thinking more often than not. I was more active than receptive. Now I focus on being the right person.

I don't know how to explain it, Simon, except that you can't be one thing with an animal and then something else with a person. If you have a great relationship with animals, it translates over to your relationship with the human animal. When you're in a relationship where your best qualities are demanded, including the wild in you, it can only have positive ramifications in your relationships across other species, including the human species. My life with birds has been transformative.




Simon Worrall curates Book Talk. Follow him on Twitter or at simonworrallauthor.com.

Source: http://news.nationalgeographic.com/2014/11/141112-california-bird-sanctuary-pandemonium-animals-conservation-ngbooktalk/